TimeXNet Citation

Linking Transcriptional Changes over Time in Stimulated Dendritic Cells to Identify Gene Networks Activated during the Innate Immune Response. Patil A, Kumagai Y, Liang KC, Suzuki Y, Nakai K. PLoS Comput Biol. 2013 Nov;9(11):e1003323. PDF

TimeXNet: Identifying active gene sub-networks using time-course gene expression profiles. Patil A and Nakai K, BMC Systems Biology, 8(Suppl4), S2, 2014. PDF