Examples

Study
Species
Cell Type
Stimulus
Input Data Type
Input Network
Reference
Phosphoproteome of mouse WT BMDCs stimulated with LPS
Mus musculus
WT mouse bone marrow derived cells
LPS stimulated BMDCs profiled for phosphorylation levels at 0.25-6h
Phosphorylation
KEGG pathways, Transfac, HitPredict
Mertins et al., Cell Reports, 2017
Proteome profiling of HeLa cells with DTT-induced ER stress
Homo sapiens
HeLa cells
ER stress induced by dithiothreitol (DTT)
Protein Levels
KEGG pathways, Transfac, HitPredict
Cheng et al., Mol. Sys. Biol., 2017
Response of myeloma cells to chemotherapy
Homo sapiens
Human myeloma cells
Myeloma cells exposed to bortezomib profiled at 1.5-12 hours
Gene Expression
KEGG pathways, Transfac, HitPredict
Wiita et al., 2013
LPS response in mouse WT BMDCs
Mus musculus
Wild type bone marrow dendritic cells
LPS stimulated BMDCs profiled at 0.5-8 hours
Gene Expression
KEGG pathways, Transfac, HitPredict
Patil et al., 2013
LPS response in mouse MyD88 KO BMDCs
Mus musculus
MyD88 knock out bone marrow dendritic cells
LPS stimulated BMDCs profiled at 0.5-8 hours
Gene Expression
KEGG pathways, Transfac, HitPredict
Patil et al., 2013
LPS response in mouse TRIF KO BMDCs
Mus musculus
TRIF knock out bone marrow dendritic cells
LPS stimulated BMDCs profiled at 0.5-8 hours
Gene Expression
KEGG pathways, Transfac, HitPredict
Patil et al., 2013
Osmotic stress response in yeast
Saccharomyces cerevisiae
Wild type S. cerevisiae cells
Yeast cells under osmotic stress profiled at 2-15 minutes
Gene Expression
Network from Gitter et al., 2013
Romero-Santacreu et al., 2009